Published papers

- SIMONČIČ, Matjaž, URBIC, Tomaz. Hydrogen bonding between hydrides of the upper-right part of the periodic table. Chemical physics. [Tiskana izd.], May 2018, vol. 507, str. 34-43.

- URBIC, Tomaz. Two dimensional fluid with one site-site associating point. Monte Carlo, integral equation and thermodynamic perturbation theory study. Journal of molecular liquids. [Tiskana izd.], doi: 10.1016/j.molliq.2017.12.111

- PRIMORAC, Tomislav, POŽAR, Martina, SOKOLIĆ, Franjo, ZORANIĆ, Larisa, URBIC, Tomaz. A simple two dimensional model of methanol. Journal of molecular liquids. [Tiskana izd.], Jul. 2018, vol. 262, str. 46-571

- PERERA, Aurélien, URBIC, Tomaz. Clustering in complex ionic liquids in two dimensions. Journal of molecular liquids. [Tiskana izd.], Sep. 2018, vol. 265, str. 307-315

- GLADOVIĆ, Martin, BREN, Urban, URBIC, Tomaz. Thermodynamic properties of water in confined environments : a Monte Carlo study. Molecular Physics. [Tiskana izd.], 2018, vol. 116, iss. 9, str. 1133-1144

- URBIC, Tomaz. Modelling water with simple Mercedes-Benz models. Molecular simulation. [Tiskana izd.], doi: 10.1080/08927022.2018.1502430.

- PERERA, Aurélien, URBIC, Tomaz. Charge ordering in two-dimensional ionic liquids. Physica. A, Statistical mechanics and its applications. [Tiskana izd.], Apr. 2018, vol. 495, str. 393-404

- PRAŠNIKAR, Anže, URBIC, Tomaz, PLAZL, Igor. Microscale technology and biocatalytic processes. Part 1, How to minimize the gap between research and industry. Chimica oggi = Chemistry today. [Tiskana izd.], 2017, vol. 35, iss. 3, str. 18-20.

- PRAŠNIKAR, Anže, URBIC, Tomaz, PLAZL, Igor. Microscale technology and biocatalytic processes. Part 2, Scale-up case of surface enzyme-catalyzed biotransformation. Chimica oggi = Chemistry today. [Tiskana izd.], 2017, vol. 35, iss. 4, str. 12-14.

- URBIC, Tomaz. Integral equation and thermodynamic perturbation theory for a two-dimensional model of chain-forming fluid. Journal of molecular liquids. [Tiskana izd.], Jul. 2017, vol. 238, str. 129-135

- URBIC, Tomaz. Liquid part of the phase diagram and percolation line for two-dimensional Mercedes-Benz water. Physical review. E. [Tiskana izd.], 2017, vol. 96, iss. 3, str. 1-7

- URBIC, Tomaz, DILL, Ken A. Analytical theory of the hydrophobic effect of solutes in water. Physical review. E. [Tiskana izd.], 2017, vol. 96, iss. 3, str. 1-12

- URBIC, Tomaz, NAJEM, Sara, DIAS, Cristiano L. Thermodynamic properties of amyloid fibrils in equilibrium. Biophysical chemistry. [Tiskana izd.], doi: 10.1016/j.bpc.2017.03.001.

- URBIC, Tomaz, MOHORIČ, Tomaž. Effects of translational and rotational degrees of freedom on properties of the Mercedes-Benz water model. The Journal of chemical physics. [Tiskana izd.], 2017, vol. 146, iss. 9, art. 094505

- URBIC, Tomaz. Integral equation and thermodynamic perturbation theory for a two-dimensional model of dimerising fluid. Journal of molecular liquids. [Tiskana izd.], 2017, vol. 228, str. 32-37

- STEPANENKO, O., URBIC, Tomaz, KALYUZHNYI, Yurij V. Second-order thermodynamic perturbation theory for the inverse patchy colloids. Journal of molecular liquids. [Tiskana izd.], 2017, vol. 228, str. 143-149

- PRŠLJA, Paulina, AUPIČ, Jana, URBIC, Tomaz. Thermodynamics and structure of a two-dimensional asymmetric electrolyte by integral equation theory. Molecular Physics.. doi: 10.1080/00268976.2017.1307469.

- PRIBEC, Ivan, URBIC, Tomaz, PLAZL, Igor. Modelling reaction-diffusion dynamics in microsystems. Computer-aided chemical engineering.. [Tiskana izd.], 2016, vol. 38, str. 1623-1628.

- URBIC, Tomaz. Properties of the two-dimensional heterogeneous Lennard-Jones dimers : an integral equation study. The Journal of chemical physics. [Tiskana izd.], 2016, vol. 145, iss. 19, art. 194503

- URBIC, Tomaz. Liquid-liquid critical point in a simple analytical model of water. Physical review. E. [Tiskana izd.], 2016, vol. 94, no. 4, art. 042126.

- HUŠ, Matej, ŽAKELJ, Gašper, URBIC, Tomaz. Properties of methanol-water mixtures in a coarse-grained model. Acta chim. slov.. [Tiskana izd.], 2015, vol. 62, no. 3, str. 524-530.

- KRŽIŠNIK, Klemen, URBIC, Tomaz. Amino acid correlation functions in protein structures. Acta chim. slov.. [Tiskana izd.], 2015, vol. 62, no. 3, str. 574-581.

- MUNAÒ, Gianmarco, URBIC, Tomaz. Structure and thermodynamics of core-softened models for alcohols. The Journal of chemical physics., 2015, vol. 142, no. 21, art. no. 214508

- AUPIČ, Jana, URBIC, Tomaz. A structural study of a two-dimensional electrolyte by Monte Carlo simulations. The Journal of chemical physics., 2015, vol. 142, no. 1, art. no. 014506

- HUŠ, Matej, URBIC, Tomaz. Existence of a liquid-liquid phase transition in methanol. Physical review. E, Statistical, nonlinear, and soft matter physics., 2014, vol. 90, no. 6, art. no. 062306

- KURTJAK, Mario, URBIC, Tomaz. A simple water model in the presence of inert Lennard-Jones obstacles II : the hydrophobic effect. Mol. Phys., 2014

- HUŠ, Matej, MUNAÒ, Gianmarco, URBIC, Tomaz. Properties of a soft-core model of methanol : an integral equation theory and computer simulation study. The Journal of chemical physics, 2014, vol. 141, no. 16, art. no. 164505

- URBIC, Tomaz. Ions increase strength of hydrogen bond in water. Chemical Physics Letters, 2014, vol. 610/611, no. 1, str. 159-162

- HUŠ, Matej, URBIC Tomaz. Thermodynamics and the hydrophobic effect in a core-softened model and comparison with experiments. Physical review. E, Statistical, nonlinear, and soft matter physics, 2014, vol. 90, no. 2, art. no. 022115

- AUPIČ, Jana, URBIC, Tomaz. Thermodynamics and structure of a two-dimensional electrolyte by integral equation theory. The Journal of chemical physics, 2014, vol. 140, no. 18, art. no. 184509

- URBIC, Tomaz, DIAS, Cristiano L. Hydration of non-polar anti-parallel ß-sheets. The Journal of chemical physics, 2014, vol. 140, no. 16, art. no. 165101

- HUŠ, Matej, URBIC, Tomaz. The hydrophobic effect in a simple isotropic water-like model : Monte Carlo study. The Journal of chemical physics, 2014, no. 14, art. no. 144904

- URBIC, Tomaz, DIAS, Cristiano L. Properties of the Lennard-Jones dimeric fluid in two dimensions : an integral equation study. The Journal of chemical physics, 2014, vol. 140, no. 9, art. no. 094703

- MOHORIČ, Tomaz, URBIC, Tomaz, HRIBAR, Barbara. The application of the integral equation theory to study the hydrophobic interaction. The Journal of chemical physics, 2014, vol. 140, no. 2, art. no. 024502

- URBIC, Tomaz. Liquid-liquid phase transition in a two-dimensional system with anomalous liquid properties. Physical review. E, Statistical, nonlinear, and soft matter physics, 2013, vol. 88, no. 6, art. no. 062303

- URBIC, Tomaz. Two-dimensional core-softened model with water like properties : Monte Carlo and integral equation study. J. chem. phys., 2013, vol. 139, no. 16, art. no. 164515

- URBIC, Tomaz. Two-dimensional core-softened model with water like properties. Study by thermodynamic perturbation theory. Condensed matter physics, 2013, vol. 16, no. 4, art. no. 43605

- HUŠ, Matej, URBIC, Tomaz. Core-softened fluids as a model for water and the hydrophobic effect. J. chem. phys., 2013, vol. 139, no. 11, art. no. 114504

- KURTJAK, Mario, URBIC, Tomaz. Water in the presence of inert Lennard-Jones obstacles. Mol. Phys., 2014, vol. 112, no. 8, str. 1132-1148

- HUŠ, Matej, ZALAR, Matja, URBIC, Tomaz. Correctness of certain integral equation theories for core-softened fluids. J. chem. phys., 2013, vol. 138, no. 22, art. no. 224508 (9 str.)

- MOHORIČ, Tomaz, URBIC, Tomaz, HRIBAR, Barbara. The application of the thermodynamic perturbation theory to study the hydrophobic hydration. J. chem. phys., 2013, vol. 139, no. 2, art. no. 024101 (6 str.)

- HUŠ, Matej, URBIC, Tomaz. Quantum chemical tests of water-water potential for interaction site water models. Acta chim. slov.. [Tiskana izd.], 2012, vol. 59, no. 3, str. 541-547.

- URBIC, Tomaz, FENNELL, Christopher J., DILL, Ken A. A microscopic theory of solvation of monoions. Acta chim. slov.. [Tiskana izd.], 2012, vol. 59, no. 3, str. 554-558.

- HUŠ, Matej, URBIC, Tomaz. Strength of hydrogen bonds of water depends on local environment. J. chem. phys., 2012, vol. 136, no. 14, art. no. 144305 (7 str.)

- LUKŠIČ, Miha, URBIC, Tomaz, HRIBAR, Barbara, DILL, Ken A. Simple model of hydrophobic hydration. J. phys. chem., B Condens. mater. surf. interfaces biophys., 2012, vol. 116, no. 21, str. 6177-6186

- URBIC, Tomaz. Analytical model for three-dimensional Mercedes-Benz water molecules. Phys. rev., E Stat. nonlinear soft matter phys. (Print), 2012, vol. E85, no. 6, art. no. 061503 (7 str.)

- URBIC, Tomaz, HOLOVKO, Myroslav. Mercedes-Benz water molecules near hydrophobic wall : integral equation theories vs Monte Carlo simulations. J. chem. phys., 2011, vol. 135, no. 13, art. no. 134706 (9 str.)

- URBIC, Tomaz, DILL, Ken A. A statistical mechanical theory for a two-dimensional model of water. J. chem. phys., 2010, vol. 132, no. 22, art. no. 224507 (9 str.)

- BIZJAK, Alan, URBIC, Tomaz, VLACHY, Vojko. Phase diagram of the Lennard-Jones system of particles from the cell model and thermodynamic perturbation theory. Acta chim. slov.. [Tiskana izd.], 2009, vol. 56, no. 1, str. 166-171.

- BIZJAK, Alan, URBIC, Tomaz, VLACHY, Vojko, DILL, Ken A. Theory for the three-dimensional Mercedes-Benz model of water. J. chem. phys., 2009, vol. 131, no. 19, art. no. 194504 (7 str.)

- URBIC, Tjaša, URBIC, Tomaz, AVBELJ, Franc, DILL, Ken A. Molecular simulations find stable structures in fragments of protein G. Acta chim. slov.. [Tiskana izd.], 2008, vol. 55, no. 2, str. 385-395.

- CERAR, Janez, URBIC, Tomaz. Viscosity and electrophoretic mobility of cesium fullerenehexamalonate in aqueous solutions : comparing experiments and theories on nanometer-sized spherical polyelectrolyte. J. phys. chem., B Condens. mater. surf. interfaces biophys., 2008, vol. 112, no. 39, str. 12240-12248.  

- URBIC, Tomaz, VLACHY, Vojko. Solvation of two-dimensional Lennard-Jones solutes. Thermodynamic perturbation theory and Monte Carlo simulations. Acta chim. slov.. [Tiskana izd.], 2007, vol. 54, no. 3, str. 437-444

- BIZJAK, Alan, URBIC, Tomaz, VLACHY, Vojko, DILL, Ken A. The three-dimensional "Mercedes Benz" model of water. Acta chim. slov.. [Tiskana izd.], 2007, vol. 54, no. 3, str. 532-537

- URBIC, Tomaz, VLACHY, Vojko, KALYUZHNYI, Yu. V., DILL, Ken A. Theory for the solvation of nonpolar solutes in water. J. chem. phys., 2007, vol. 127, no. 17, art. no. 174505 (9 str.).

- URBIC, Tomaz, VLACHY, Vojko, KALYUZHNYI, Yu. V., DILL, Ken A. An improved thermodynamic perturbation theory for Mercedes-Benz water. J. chem. phys., 2007, vol. 127, no. 17, art. no. 174511 (4 str.).

- URBIC, Tomaz, VLACHY, Vojko, DILL, Ken A. Confined water : a Mercedes-Benz model study. J. phys. chem., B Condens. mater. surf. interfaces biophys., 2006, vol. 110, no. 10, str. 4963-4970.

- URBIC, Tomaz, VLACHY, Vojko, PIZIO, Orest, DILL, Ken A. Water-like fluid in the presence of Lennard-Jones obstacles : predictions of an associative replica Ornstein-Zernike theory. J. mol. liq.. [Print ed.], 2004, vol. 112, no. 1/2, str. 71-80.

- URBIC, Tomaz, VLACHY, Vojko, KALYUZHNYI, Yu. V., DILL, K. A. Orientation-dependent integral equation theory for a two-dimensional model of water. J. chem. phys., 2003, vol. 118, no. 12, str. 5516-5525

- URBIC, Tomaz, VLACHY, Vojko, KALYUZHNYI, Yu. V., SOUTHALL, N. T., DILL, K. A. A two-dimensonal model of water : solvation of nonpolar solutes. J. chem. phys., 2002, vol. 116, no. 2, str. 723-729

- URBIC, Tomaz, BEŠTER-ROGAČ, Marija, JAMNIK, Andrej, STARE, Jernej. Small-angle x-ray scattering functions of rodlike polyelectrolytes in aqueous solutions. Acta chim. slov.. [Tiskana izd.], September 2001, vol. 48, no. 3, str. 343-352

- URBIC, Tomaz, VLACHY, Vojko, KALYUZHNYI, Yu. V., SOUTHALL, N. T., DILL, K. A. A two dimensional model of water : theory and computer simulations. J. chem. phys., February 2000, vol. 112, no. 6, str. 2843-2848

- URBIC, Tomaz, VLACHY, Vojko. Structure and thermodynamics of a two-dimensional model of electrolyte solutions. Acta chim. slov.. [Tiskana izd.], 1999, letn. 46, štev. 4, str. 531-541